Meet The Microbiologist - The Scientists Behind The Microbiology

Jennifer Martiny describes the incredible microbial biodiversity of natural ecosystems such as soils and waterways. She explains how to add a bit of control in experiments with so many variables, and why categorizing microbial types is important for quantifying patterns. Host: Julie Wolf Subscribe (free) on iPhone, Android, RSS, or by email. You can also listen on your mobile device with the ASM Podcast app. Julie's biggest takeaways: Studying microbial community functions in their natural environment are harder to understand, but help us to parse the complexity of the natural world, in part because these experiments also include local flora and fauna that are often omitted in the controlled lab environment. Microbial cages - an actual physical barrier that contains a soil-based community - can help to disentangle the effects of the microbial community from those of the surrounding environment by adding a level of control by limiting interaction of microbes inside the nylon mesh cage with those outside of i

Peter Hotez talks about neglected tropical diseases: what are they, where are they found, and where did the term “neglected tropical disease” come from, anyway? Hotez discusses some of the strategies his and other groups are using for vaccine development, and his work as an advocate for childhood vaccines and global health. Host: Julie Wolf Subscribe (free) on iPhone, Android, RSS, or by email. You can also listen on your mobile device with the ASM Podcast app. Julie's biggest takeaways: Renaming “other diseases” - a large collection of disparate diseases such as schistosomiasis, leishmaniasis, and onchocerciasis (also called river blindness) - as “neglected tropical diseases” by Hotez and colleagues was integral to bringing attention to the diseases of the bottom billion, people that live on less than one U.S. Dollar per day. Neglected tropical diseases are often chronic and debilitating without high mortality. These diseases trap people in poverty due to their long-term effects. The NTDs are often ass

Stacey Schultz-Cherry explains the selection process to choose the influenza virus strains to include in the annual influenza vaccine. Schultz-Cherry also discusses her research on the influence of obesity on the course of disease and vaccine efficacy. Host: Julie Wolf Subscribe (free) on iPhone, Android, RSS, or by email. You can also listen on your mobile device with the ASM Podcast app. Julie's biggest takeaways: The WHO Collaborating Centers and National Influenza Centers around the world work with a humongous network of physicians, public health workers, and veterinarians to identify strains most likely to become part of the circulating influenza viruses. An influenza strain that makes birds very sick is not necessarily a strain that will make people sick. Predicting phenotype from genotype remains a challenge. Receptor binding to mammalian receptors, signatures in the genome that allow it to replicate in mammalian cells, and transmission between ferrets are the marks of potentially bad strains

Gigi Kwik Gronvall talks to MTM about the importance of biopreparedness. Gronvall discusses her work in creating policies around potential natural, accidental, and man-made pandemics. She describes her experiences running pandemic thought exercises that help researchers, public health workers, and governmental officials apply preparedness ideas to real-world simulations. Host: Julie Wolf Julie's biggest takeaways: Thought exercises and scenarios work well for people to understand how technology, communications, human behaviors can affect the spread of infectious disease. Many after-action reports after major biosecurity breaches, such as the Dugway contamination event, where inactivated Bacillus anthracis was accidentally shipped without being inactivated. These involve reports on what went wrong, who made mistakes, and how to prevent repeats of these errors going forward. International groups such as the Global Health Security Alliance work with governments and institutions around the world to run

Jack Gilbert talks about his studies on microbiomes of all sorts. He describes the origin of the Earth Microbiome Project, which has ambitions to characterize all microbial life on the planet, and talks more specifically about the built microbiome of manmade ecosystems such as hospitals. Gilbert explains how advances in scientific techniques have driven past microbiome-related discoveries and will continue to do so in the future. Host: Julie Wolf Subscribe (free) on iPhone, Android, RSS, or by email. You can also listen on your mobile device with the ASM Podcast app. Julie's biggest takeaways: Insect-pathogenic fungi living in plant roots can pass nitrogen from killed insects to their plant hosts, receiving different carbon nutrients from the plants in return. Fungi harvested after growth on inexpensive materials like chicken droppings are used in agriculture both as fertilizer and as insecticide. Cyclosporine was first discovered in insect-pathogenic fungi. Raymond St. Leger and other scientists work

Tara C. Smith discusses her work uncovering ties between agriculture and methicillin-resistant Staphylococcus aureus (MRSA). Her studies have found MRSA on and around pig farms, on animal handlers, and even in packaged meat in the grocery store. She also talks about using zombies as an allegory for infectious disease outbreak preparedness. Links for this episode Tara C. Smith website Aetiology Blog on Science Blogs Network Outbreak News Interview with Smith on her work communicating the science around vaccines and fighting anti-vaccine sentiments. Smith’s collected writings on Ebola and emerging infectious diseases Zombie Infections: Epidemiology, Treatment, and Prevention in the British Medical Journal History of Microbiology tidbit: Thomas Jukes’ 1968 Letter to the British Medical Journal and 1997 Recollections in Protein Science. Julie’s biggest takeaways: MRSA transitioned from primarily hospital-acquired to community-acquired infections in the 1990s. In the early 2000s, MRSA strains associated with liv

Raymond St. Leger describes his work on insect pathogenic fungi. Members of this diverse group of fungi can be found as part of the plant rhizosphere, where they provide nutrients to the plant, and can also be deployed as insect control agents. Raymond discusses his work with communities in Burkina Faso, where he works with officials to educate and gain consent for use of mosquito-killing fungi to control the spread of malaria. Host: Julie Wolf Subscribe (free) on iPhone, Android, RSS, or by email. You can also listen on your mobile device with the Microbeworld app. Julie's biggest takeaways: Insect-pathogenic fungi living in plant roots can pass nitrogen from killed insects to their plant hosts, receiving different carbon nutrients from the plants in return. Fungi harvested after growth on inexpensive materials like chicken droppings are used in agriculture both as fertilizer and as insecticide. Cyclosporine was first discovered in insect-pathogenic fungi. Raymond St. Leger and other scientists work

Vincent Racaniello discusses how he ended up studying polio virus and the three eureka moments he’s experienced so far: uncovering the polio genome, discovering the polio receptor, and generating a mouse model of polio disease. Vincent discusses his interest in science communications, including his blog and active podcast network. Host: Julie Wolf Activities of the National Foundation for Infantile Paralysis in the Field of Virus Research (free) on iPhone, Android, RSS, or by email. You can also listen on your mobile device with the Microbeworld app. Julie's biggest takeaways: All three polio virus serotypes are covered by the polio vaccine; type 2 has been eradicated and type 3 is close to being eradicated. Enterovirus 68 is a related enteroviruses that is associated with paralysis, but its receptor and disease progression remain largely unknown. Developing tools and techniques to study one virus that can cross into the central nervous system, such as polio, can set up a lab to study other neurotropic viru

Welcome back, Meet the Scientist subscribers! For those of you who never heard an episode of Meet the Scientist, thanks for taking a listen. We're excited to tell all of you we're now Meet the Microbiologist (MTM). MTM is the same great, one-on-one conversations captured in Meet the Scientist just with a new name and a new host.  Julie Wolf of the American Society for Microbiology will be bringing back the podcast with all new episodes with scientists who work in one of the many areas of the microbial sciences — genomics, antibiotic resistance, virology, synthetic biology, emerging infectious diseases, microbial ecology, public health, probiotics, and more! The first two new episodes will be released September 28th, beginning with an episode with Vincent Racaneillo of This Week in Microbiology taking about his research on polio and Zika virus, and his experience as a science communicator. The other episode, released the same day, is with Raymond St. James discussing applications of insect-pathogenic fungi as

In this podcast, I speak to Martin Blaser, Frederick H. King Professor of Internal Medicine and Chairman of the Department of Medicine and Professor of Microbiology at the New York School of Medicine. Blaser studies Helicobacter pylori, bacteria that live in the stomachs of billions of people. Blaser has shown that H. pylori has a strange double life inside of us. On the one hand, it can cause ulcers and gastric cancer. On the other hand, it can protect us from diseases of the esophagus, allergies, asthma, and perhaps even obesity. We're now eradicating H. pylori with antibiotics and other luxuries of modern life; Blaser thinks we ought to bring it back--but keep it on a tight leash.

All life hums with electricity, from our heartbeats to the electrons that flow to the oxygen we breathe.But some bacteria are electricians par excellence, generating electric currents in the soil and water. In this podcast, I talk to microbe-electricity expert Jeff Gralnick of the University of Minnesota about the biology behind these currents, and how engineers may be able to harness it to power technology.

In this podcast I talk to Jessica Green of the University of Oregon about aerobiology: the science of life in the air. We live in an invisible ocean of life, with millions of microbes swarming around us. Microbes can live many miles high in the upper atmosphere, and they may actually be able to feed and grow in clouds. Green and I talk not just about high-altitude aerobiology, but about the microbes we share our homes and offices with, and how better understanding them can help our health.

In this podcast, I talk to Charles Bamforth of the University of California, Davis, about the surprisingly complex chemistry of beer, and the pivotal role microbes play in making it happen.

In this podcast I talk to Thomas Scott of the University of California, Davis, about dengue fever, a disease that's on the rise. Spread by mosquitoes, it can make you feel as if your bones are broken and leave you exhausted for months. In more serious cases, people suffer uncontrollable bleeding and sometimes die. Dengue is expanding its range, and is even making incursions into the United States. Scott and I talk about what scientists know and don't know yet about dengue, and what the best strategy will be to drive the virus down.

In this podcast I talk to Charles Ofria, a computer scientist at Michigan State University. Ofria and his colleagues have created a program called Avida in which digital organisms can multiply and evolve. They are studying many of evolution's deepest questions, such as how complexity evolves from simplicity and why individuals make sacrifices for each other. The evolution unfolding in Avida is also yielded new software that can run robots and sensors in the real world. Bonus Content includes: Avida Movie In this movie, we started with a normal Avida organism in the middle of the population and let it grow for a while before injecting a highly-virulent parasite into the middle.  The hosts are all colored with shades of blue and the parasites are shades of red.

In this podcast I spoke to David Baker, a professor of biochemistry at the University of Washington. Baker and his colleagues study how proteins fold, taking on the complex shapes that make our lives possible. It turns out that protein folding is a fiendishly hard problem to solve, and even the  most sophisticated computers do a poor job of solving it. So Baker and his colleagues have enlisted tens of thousands of people to play a protein-folding game called Foldit. I talked to David Baker about the discoveries they've made through crowdsourcing, and the challenges of getting 57,000 co-authors listed on a paper. Additional Resources: Rosetta@Home Foldit

It never occurred to me that the human body and a coral reef have a lot in common--until I spoke to Forest Rohwer for this podcast. Rohwer is a microbiologist at San Diego State University, and he studies how microbes make coral reefs both healthy and sick. Just as we are home to a vast number of microbes, coral reefs depend on their own invisible menagerie of algae and bacteria to get food, recycle waste, and fend off invaders. But as Rohwer writes in his new book, Coral Reefs in the Microbial Seas, we humans have thrown this delicate balance out of kilter, driving the spread of coral-killing microbes instead. Additional Reading: Viral communities associated with healthy and bleaching corals.The lagoon at Caroline/Millennium atoll, Republic of Kiribati: natural history of a nearly pristine ecosystem.Metagenomic analysis of stressed coral holobionts.

In this podcast, I talk to Susan Golden, the co-director of the Center for Chronobiology at the University of California at San Diego. We talked about Golden's research into time--in particular, how living things know what time it is. While you may have heard of our own "body clock" that tracks the 24-hour cycle of the day, it turns out that some bacteria can tell time, too. Golden has discovered how evolution has produced a molecular clock inside microbes far more elegant than any manmade timepiece. Additional Reading: Proteins Found in a CikA Interaction Assay Link the Circadian Clock, Metabolism, and Cell Division in Synechococcus elongatus Quinone sensign by the circadian input kinase of the cyanobacterial circadian clock

How many genes can a species lose and still stay alive? It turns out, bacteria can lose just about all of them! In this podcast, I talk to Nancy Moran of Yale University about her fascinating work on the microbes that live inside insects such as aphids and cicadas. After millions of years, they have become stripped down creatures that are revealing some profound lessons about how superfluous most genes are--at least if you live inside a host. Recent Publications: Bacterial genes in the aphid genome: absence of functional gene transfer from Buchnera to its host Symbiosis and insect diversification: an ancient symbiont of sap-feeding insects from the bacterial phylum Bacteroidetes

In this podcast I talk to Carl Bergstrom of the University of Washington about the mathematics of microbes. Bergstrom is a mathematical biologist who probes the abstract nature of life itself. We talk about how life uses information, and how information can evolve. But in Bergstrom's hands, these abstractions shed light on very real concerns in medicine, from the way that viruses jam our immune system's communication systems to to the best ways to fight antibiotic resistance. Publications: Mapping Change in Large Networks [html] [pdf] The transmission sense of information [pdf] Dealing with deception in biology [pdf]